Course Details

Course Information
SemesterCourse Unit CodeCourse Unit TitleT+P+LCreditNumber of ECTS CreditsLast Updated Date
3BENG201BIOCHEMISTRY3+0+03614.05.2025

 
Course Details
Language of Instruction English
Level of Course Unit Bachelor's Degree
Department / Program BIOENGINEERING
Type of Program Formal Education
Type of Course Unit Compulsory
Course Delivery Method Face To Face
Objectives of the Course O1. Explaining the structure of proteins, structure of amino acids, and metabolism of proteins and amino acids
O2. Outlining DNA, RNA and the flow of genetic information with respect to biochemical properties
O3. Defining the function and regulation of carbohydrate metabolism, define the biomolecules and their functions which comprise carbohydrate metabolism
O4. Explaining the function and transport of lipids, classify lipids and compare the alt groups of lipids, explain the metabolism of lipids and discuss the definition and function of the enzyme, classify and explain the functions of enzymes, explain the importance of enzymes in biological life.
Course Content This course examines the chemical and physical properties of the cell and its building blocks, with special emphasis on the structures of proteins and principles of catalysis, as well as the chemistry of organic / inorganic cofactors required for chemical transformations within the cell. Topics encompass the basic principles of metabolism and regulation in pathways, including glycolysis, gluconeogenesis, fatty acid synthesis / degradation, pentose phosphate pathway, Krebs cycle and oxidative phosphorylation
Course Methods and Techniques In this course, both theoretical instruction and applied, interactive teaching methods will be employed. Core concepts such as the chemical and physical properties of the cell, protein structure, principles of catalysis, and metabolic pathways will be delivered by the instructor through presentations and supported by visual materials. To promote active student participation, in-class discussions, case study analyses, and conceptual problem-solving activities will be incorporated. Complex topics such as enzyme catalysis, the role of cofactors, and regulation of metabolic pathways will be made more accessible using diagrams, animations, and simulations.

A problem-based learning approach will be adopted to encourage students to develop solutions to biochemical problems and understand the interconnections between metabolic pathways. Through case-based learning, key pathways such as glycolysis, gluconeogenesis, fatty acid metabolism, the pentose phosphate pathway, the Krebs cycle, and oxidative phosphorylation will be explored in clinical or experimental contexts. Students will analyze real or simulated examples involving metabolic disorders or regulatory mechanisms.

To reinforce understanding, structured assignments, concept maps, and short presentations will be used, both individually and in groups. Additionally, students will engage in literature reviews and scientific article analyses to foster scientific thinking skills. These teaching methods aim not only to provide students with foundational knowledge but also to develop their ability to interpret, analyze, and apply biochemical concepts in a scientific context.
Prerequisites and co-requisities ( BENG103 )
Course Coordinator None
Name of Lecturers Asist Prof.Dr. Emel Başak Gencer Akçok emelbasak.gencerakcok@agu.edu.tr
Assistants None
Work Placement(s) No

Recommended or Required Reading
Resources 1. Biochemistry: Concepts and Connections, Dean R. Appling, Spencer J. Anthony-Cahill, Christopher K. Mathews, Second Edition, Global edition, Pearson
Course Notes 1. Biochemistry: Concepts and Connections, Dean R. Appling, Spencer J. Anthony-Cahill, Christopher K. Mathews, Second Edition, Global edition, Pearson
2. Biochemistry, Lehninger
3. Essentials of Biochemistry, Voet & Voet
4. Introduction to Protein Science_ Architecture, Function, and Genomics - Arthur M. Lesk - Oxford University Press (2004)
Documents Canvas
Assignments Canvas
Exams Sınıf içi

Course Category
Health %100

Planned Learning Activities and Teaching Methods
Activities are given in detail in the section of "Assessment Methods and Criteria" and "Workload Calculation"

Assessment Methods and Criteria
In-Term Studies Quantity Percentage
Yarıyıl İçi Çalışmalarının Başarı Notunun Katkısı 1 % 20
Yarıl yılSonu Sınavı/Dönem Projesinin Başarı Notuna Katkısı 1 % 25
Proje/Çizim 1 % 25
Final examination 1 % 30
Total
4
% 100

 
ECTS Allocated Based on Student Workload
Activities Quantity Duration Total Work Load
Araştırma Ödevi 1 2 2
Ara Teslim ve Jüri 1 8 8
Grup Sunumu 1 3 3
Ev Ödevi 5 4 20
Sınıf İçi Aktivitesi 2 3 6
Final Teslimi ve Jüri 1 10 10
Proje 1 15 15
Kısa Sınav 1 3 3
Okuma 1 3 3
Araştırma 12 2 24
Kişisel Çalışma 1 3 3
Ders dışı çalışma 14 2 28
Takım/Grup Çalışması 1 3 3
Yüz Yüze Ders 14 3 42
Final Sınavı 1 12 12
Total Work Load   Number of ECTS Credits 6 182

 
Course Learning Outcomes: Upon the successful completion of this course, students will be able to:
NoLearning Outcomes
1 Recognize major concepts and principles in biochemistry and think analytically about biological processes.
2 Describe the structure and function of the biochemically important molecules carbohydrates, lipids, nucleic acids and proteins.
3 Define the citric acid cycle and the electron transport chain.
4 Outline DNA synthesis (replication), synthesis of RNA (transcription) and protein synthesis (translation).
5 Express the integration of biochemical processes in the context of cells, tissues, and whole organisms.

 
Weekly Detailed Course Contents
WeekTopicsStudy MaterialsMaterials
1 Biochemistry and the Language of Chemistry
2 The Chemical Foundation of Life: Weak Interactions in an Aqueous Environment
3 Introduction to Proteins: The Primary Level of Protein Structure
4 The Three-Dimensional Structure of Proteins
5 Protein Function and Evolution
6 Enzymes: Biological catalysis
7 Nucleic acids: DNA, RNA and the Flow of genetic information
8 Carbohydrates: Sugars, saccharides, glycans
9 Lipids, Membranes and Cellular Transport
10 Lipids, Membranes and Cellular Transport
11 Chemical Logic of Metabolism
12 Carbohydrate metabolism: Glycolysis, Gluconeogenesis, Glycogen Metabolism, and the Pentose Phosphate Pathway
13 The citric acid cycle
14 Electron Transport, Oxidative Phosphorylation, and Oxygen Metabolism
16

 
Contribution of Learning Outcomes to Programme Outcomes
P1 P2 P3 P4 P5 P6 P7 P8 P9 P10 P11 P12
C1 4 5 5 5 5 2 4 5 2 4 3 3
C2 4 5 5 5 5 2 4 5 2 4 3 3
C3 4 5 4 4 4 2 3 5 2 4 3 3
C4 4 5 4 4 4 2 3 5 2 4 3 3
C5 4 5 5 5 4 2 4 5 2 4 3 3

  Contribution: 1: Very Slight 2:Slight 3:Moderate 4:Significant 5:Very Significant

  
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