Course Details

BIOMEDICAL IMAGE PROCESSING

BENG421

Course Information
SemesterCourse Unit CodeCourse Unit TitleT+P+LCreditNumber of ECTS Credits
5BENG421BIOMEDICAL IMAGE PROCESSING3+0+035

Course Details
Language of Instruction English
Level of Course Unit Bachelor's Degree
Department / Program BIOENGINEERING
Type of Program Formal Education
Type of Course Unit Elective
Course Delivery Method Face To Face
Objectives of the Course - Comprehending fundamental knowledge for biomedical image processing
- Comprehending the purpose and processing of biomedical images
- Understanding how images are formed and processed
- Learning biomedical image processing steps, (preprocessing (histogram, quantization), filters, edge detection, feature extraction, usage area of machine learning, ANN) and usage areas
Course Content In this course, all basic biomedical image processing. All basic steps of image processing will be explained. In this course, Python applications will also be applied. Obtaining images, pre-processing parts, segmentation, extraction, and interpretation will be explained with detailed step by step.
Course Methods and Techniques Learners will be provided with as much opportunities of hands-on practice as possible, with the aim of striking a balance between learner-centeredness and sufficient guidance. Various forms of interaction (i.e. pair work and group work) will also be encouraged to cater for learners with different learning styles. Additionally, individuals will be expected to produce both in-class writings and homework assignments in addition to the reading tasks, which will encourage them to reflect and think critically. Technology will also be incorporated into the classroom procedures in order to create a better learning environment.
Prerequisites and co-requisities None
Course Coordinator None
Name of Lecturers Research Assist.Dr. Refika Sultan DOĞAN https://avesis.agu.edu.tr/refikasultan.dogan refikasultan.dogan@agu.edu.tr
Assistants None
Work Placement(s) No

Recommended or Required Reading
Resources Digital Image Processing Third Edition Rafael C. Gonzalez University of Tennessee Richard E. Woods MedData Interactive
Biyomedikal Görüntü İşleme Thomas Martin Deserno (Editör)
By the end of the course, the student will be able to
LO1- Define biomedical image processing methods
LO2- Describe application areas of biomedical image processing systems
LO3- Learning how biomedical image processing is applied
LO4- Evaluate the recent developments in biomedical image processing
https://dl.ebooksworld.ir/motoman/Digital.Image.Processing.3rd.Edition.www.EBooksWorld.ir.pdf

Course Category
Mathematics and Basic Sciences %30
Engineering %20
Engineering Design %10
Social Sciences %0
Education %5
Science %10
Health %20
Field %70

Planned Learning Activities and Teaching Methods
Activities are given in detail in the section of "Assessment Methods and Criteria" and "Workload Calculation"

Assessment Methods and Criteria
In-Term Studies Quantity Percentage
Yarıyıl İçi Çalışmalarının Başarı Notunun Katkısı 1 % 5
Quiz/Küçük Sınav 3 % 10
Ödev 3 % 20
Proje/Çizim 1 % 30
Final examination 1 % 35
Total
9
% 100

 
ECTS Allocated Based on Student Workload
Activities Quantity Duration Total Work Load
Araştırma Ödevi 3 3 9
Tartışma 14 1 14
F2F Dersi 14 3 42
Sınıf İçi Aktivitesi 14 1 14
Sunum 1 1 1
Proje 1 6 6
Araştırma 10 2 20
Takım/Grup Çalışması 1 1 1
Teknik Gezi 1 1 1
Öğretici Sunum/Açıklama 1 1 1
Yüz Yüze Ders 14 3 42
Final Sınavı 1 3 3
Total Work Load   Number of ECTS Credits 5 154

Course Learning Outcomes: Upon the successful completion of this course, students will be able to:
NoLearning Outcomes
1 Define biomedical image processing methods
2 Describe application areas of biomedical image processing systems
3 Learning how biomedical image processing is applied
4 - Evaluate the recent developments in biomedical image processing


Weekly Detailed Course Contents
WeekTopicsStudy MaterialsMaterials
1 Overview of Biomedical Image Processing applications (Chapter 1) Digital Image Processing Third Edition Rafael C. Gonzalez University of Tennessee Richard E. Woods MedData Interactive
2 Digital Image Modalities and Processing https://dl.ebooksworld.ir/motoman/Digital.Image.Processing.3rd.Edition.www.EBooksWorld.ir.pdf
3 Medical Imaging Modalities https://dl.ebooksworld.ir/motoman/Digital.Image.Processing.3rd.Edition.www.EBooksWorld.ir.pdf
4 Image acquisition and sensing https://dl.ebooksworld.ir/motoman/Digital.Image.Processing.3rd.Edition.www.EBooksWorld.ir.pdf
5 Geometric Transformation https://dl.ebooksworld.ir/motoman/Digital.Image.Processing.3rd.Edition.www.EBooksWorld.ir.pdf
6 Edge detection https://dl.ebooksworld.ir/motoman/Digital.Image.Processing.3rd.Edition.www.EBooksWorld.ir.pdf
7 Midterm 1
8 Spring Break Ramadan Bayram
9 Lecture Free Week
10 DL and ML applications are used in BIP areas https://dl.ebooksworld.ir/motoman/Digital.Image.Processing.3rd.Edition.www.EBooksWorld.ir.pdf
11 Thresholding, Image Segmentation https://dl.ebooksworld.ir/motoman/Digital.Image.Processing.3rd.Edition.www.EBooksWorld.ir.pdf
12 Morphological image processing https://dl.ebooksworld.ir/motoman/Digital.Image.Processing.3rd.Edition.www.EBooksWorld.ir.pdf
13 Midterm 2
14 Object and feature detection https://dl.ebooksworld.ir/motoman/Digital.Image.Processing.3rd.Edition.www.EBooksWorld.ir.pdf
15 Term Project Final Presentation


Contribution of Learning Outcomes to Programme Outcomes
P4
C1 4
C2 5
C3 5
C4 4

Contribution: 1: Very Slight 2:Slight 3:Moderate 4:Significant 5:Very Significant


https://sis.agu.edu.tr/oibs/bologna/progCourseDetails.aspx?curCourse=72056&lang=en